About   Help   FAQ
rs107890622 SNP Detail
Summary
  • ID
    rs107890622
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:28218279 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCACCTGGC TGATAACAAG
    AATTTCTAAT CCCTGTACCA GGGAGGTAGG AACACGAGGA CCTTCCAGCT TTCCTAGCCC
    AATGCTAAAA CCCTGGGCTC AGTAAGAGAC CCAGTCTCAC GGGACCTGAG CTGTACATAC
    ATGTACACAT GCTTGCAGTG TGAAAGGCAC ACAAACATGT GCTTAGAAAA CAAAACTGGC
    M
    GGGCAGTGGT GGCGCACACC TTTAATCCCA GAACTGGGGA GGCAGAGGCA GGTGGATTTC
    TGAGTTCAAG GCCAGCCTGG TCTACTACAG AGAAACCCTG TCTCGAAAAA CATACACACA
    CACACACACA CACACACACA CACACACACA CACACAAAAT AACAACCAAA ACTGGGAAAT
    GCCTTCACGT CTGAAGATGT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss325351140 CHEV_17_28136250 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs107890622 SNP A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:28218279 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Anks1 ankyrin repeat and SAM domain containing 1 within coordinates
Gm35290 predicted gene, 35290 1760 bp downstream
Rr340974 regulatory region 340974 1080 bp distal
Rr340975 regulatory region 340975 123 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory