rs107890622 SNP Detail

Summary

• ID
  rs107890622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28218279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCTGGC TGATAACAAG
  AATTTCTAAT CCCTGTACCA GGGAGGTAGG AACACGAGGA CCTTCCAGCT TTCCTAGCCC
  AATGCTAAAA CCCTGGGCTC AGTAAGAGAC CCAGTCTCAC GGGACCTGAG CTGTACATAC
  ATGTACACAT GCTTGCAGTG TGAAAGGCAC ACAAACATGT GCTTAGAAAA CAAAACTGGC
  M
  GGGCAGTGGT GGCGCACACC TTTAATCCCA GAACTGGGGA GGCAGAGGCA GGTGGATTTC
  TGAGTTCAAG GCCAGCCTGG TCTACTACAG AGAAACCCTG TCTCGAAAAA CATACACACA
  CACACACACA CACACACACA CACACACACA CACACAAAAT AACAACCAAA ACTGGGAAAT
  GCCTTCACGT CTGAAGATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325351140	CHEV_17_28136250	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107890622					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28218279 () rs orientation: forward

Symbol	Name	Function Class
Anks1	ankyrin repeat and SAM domain containing 1	within coordinates
Gm35290	predicted gene, 35290	1760 bp downstream
Rr340974	regulatory region 340974	1080 bp distal
Rr340975	regulatory region 340975	123 bp proximal