rs107892175 SNP Detail

Summary

• ID
  rs107892175
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171487167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCCCAAATGT CCCACCTCTA
  W
  TTCCTGCATA GGCCATAGGC TTTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120001853	PARCsnp_1.15004	PARC_SEQ	INBRED	f	SNP		A	T
ss120004149	PARCsnp_1.04343	PARC_SEQ	INBRED	f	SNP		A	T
ss146171815	ENSMUSSNP5862870	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320120219	CHEV_1_173589730	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs107892175					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171487167 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	694 bp downstream
Rr423376	regulatory region 423376	633 bp distal
Rr423377	regulatory region 423377	671 bp distal