rs107893983 SNP Detail

Summary

• ID
  rs107893983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGTCGGCATA AGTCCTGGTG AAGGAACGCG TGGATGCTGA
  GAGGGAGGCT GGAGATTGGG TTCCCTGGTC TGAGAGAGGA GACCTCTGGG TCTGAGGAAG
  R
  AGGCCTAGGC TCTGGACCCC CGAGTTTGAG AGAGGAGTGC TGGGGTCTGG ACTCCTGAGT
  CTGAGGAAGG AGGGGGTGAA AGGAAGCTGA CACCGGAATC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148179402	ENSMUSSNP128406	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs107893983					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	913 bp proximal
Rr641974	regulatory region 641974	1748 bp distal
Rr641975	regulatory region 641975	815 bp proximal
Rr641976	regulatory region 641976	1904 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1203 bp downstream
Tssr64335	transcription start site region 64335	132 bp downstream
Tssr64336	transcription start site region 64336	1056 bp upstream
Tssr64337	transcription start site region 64337	1199 bp upstream
Tssr70484	transcription start site region 70484	1262 bp downstream
Tssr70485	transcription start site region 70485	1813 bp downstream