rs107897605 SNP Detail

Summary

• ID
  rs107897605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50195066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGAAACC CACAGCTGAC
  CTGGAAGAAA GCACCTTGTA TTTTCTAGTC TGTTCTTGAT AGATGGCATG GCTGTCATAA
  ATAAATCACA GTGGACGTTG TACTGTTGGG ACACTCTGAA GAGAAGCCTT TGAGTTAATG
  TTTGTCTGTT TGTTTTTAGT TTGTGACTCA CAAATCTAAA GCTAGGCTGT AATAGTCACA
  Y
  CAGGTTGTCC ATTAACTGTT ACATCTCTGC TTATCATTAA TAACATCACC CTGCCAAGAT
  GTGGAGTTGC CTAGGAGATG GCTTCTGTCT GCATGTATCT AAAGGTAATA TCCATGCTGC
  TAGCTACTTT GCTCATCACT GTGGCAAAGC ACCTGACAAA AACAACTTAA AGAAAGAAGA
  GTTTCTTCTC TCTTTAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146531305	ENSMUSSNP4667772	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107897605					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50195066 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	84 bp upstream
Rr556732	regulatory region 556732	within coordinates
Rr556733	regulatory region 556733	231 bp proximal
Rr556734	regulatory region 556734	1634 bp proximal
Rr556735	regulatory region 556735	1748 bp proximal
Rr556736	regulatory region 556736	1866 bp proximal
Tssr17697	transcription start site region 17697	1762 bp downstream