rs107897742 SNP Detail

Summary

• ID
  rs107897742
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20362407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGCAGCTCC CGGAGCACAG CGGGCAGAGC TGCGGACTGC
  GCGCTCCCCT GCTGCCCCGG GCCTCCAGCG GTGGCTCCCG CGCCCCGCGG CGACTTCCGC
  T
  CCCGCGCTTC CCTTTGTTCA AGTCCCCGAG CGGCTGTGGG GTCCGACCCC GCGCCCTGGG
  CGACTGAGGC GCCCGCAGTC CGCGCCCTGG CGCCCTGGAG C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss137276323	ENSMUSSNP3923289	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs107897742					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20362407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	within coordinates
Gm49697	predicted gene, 49697	109 bp upstream
Gm61293	predicted gene, 61293	within coordinates
Rr463625	regulatory region 463625	37 bp distal
Tssr112921	transcription start site region 112921	143 bp downstream