rs107898830 SNP Detail

Summary

• ID
  rs107898830
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20360890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GGCAGAGAGT TGCAGAGTTT
  T
  GGGATTGCAG TTTATTGCCT TGTGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137276233	ENSMUSSNP6425587	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107898830					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20360890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	1183 bp proximal
Gm49692	predicted gene, 49692	1811 bp downstream
Gm49697	predicted gene, 49697	1626 bp upstream
Gm61293	predicted gene, 61293	1328 bp upstream
Rr463625	regulatory region 463625	1191 bp proximal
Tssr112921	transcription start site region 112921	1326 bp upstream