rs107899541 SNP Detail

Summary

• ID
  rs107899541
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43669473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCCCAGCCCC CCAGATCTCC
  M
  GTTGGCCATT TCTCCCTCCC CCCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145668059	ENSMUSSNP6446458	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107899541					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43669473 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	1869 bp upstream
Rr527086	regulatory region 527086	1379 bp proximal
Rr527087	regulatory region 527087	1880 bp proximal
Tssr144671	transcription start site region 144671	1438 bp upstream
Tssr144672	transcription start site region 144672	1740 bp upstream
Tssr144673	transcription start site region 144673	1781 bp upstream
Tssr144674	transcription start site region 144674	1804 bp upstream
Tssr144675	transcription start site region 144675	1841 bp upstream