rs107902657 SNP Detail

Summary

• ID
  rs107902657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25787501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTTCCCCAC CACAGCCCAG TAAACGGAAG CTCACAGCCG
  GCCTGCCTCC AGCTTCACTT CGGCTGCTTA GCTGCTGGGA CCCCACCCAC CAGCCTGATT
  Y
  TGAGGCTGGG GCTATTGACC CACGCTGTTG TTACTGTAGA GTGGAGGCAG ATTGTGAGTA
  AGTCCCGGTG ACGGTAGACA TCTCCAGAGT GCTAGATGGA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145393096	ENSMUSSNP3719983	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107902657					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25787501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8770	CpG island 8770	497 bp distal
Cpgi8771	CpG island 8771	1266 bp proximal
Rr523606	regulatory region 523606	536 bp distal
Sox8	SRY (sex determining region Y)-box 8	Intron
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates