rs107908797 SNP Detail

Summary

• ID
  rs107908797
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129006885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTCTATTGTG AGTTTTCTGT CTGGGGACTA ATAAGCATTA
  CAGAGGACGT GATGTGAGGC GACTTATTTT ATTCATGTAT AAATCCAGAG TGAACCACCA
  W
  GCAGTTGTTC GACTAAAGTC AAGGTAATTT TCTTTTGACG GGTCCATTTT CTTCTCGATT
  TCTAATTTAT TAGCCTGCCT TTTCAAGACT CTGTCTTCTT T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135885173	ENSMUSSNP2746826	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs107908797					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129006885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13808	CpG island 13808	301 bp proximal
Gm27195	predicted gene 27195	1441 bp downstream
Pitx2	paired-like homeodomain transcription factor 2	Intron
Rr584970	regulatory region 584970	404 bp distal
Rr584971	regulatory region 584971	246 bp proximal
Tssr31631	transcription start site region 31631	684 bp upstream
Tssr31632	transcription start site region 31632	714 bp upstream
Tssr31633	transcription start site region 31633	1033 bp upstream