rs107910871 SNP Detail

Summary

• ID
  rs107910871
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21695004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCCTGTCAGA TCCCTATGCT GACCACTTCC TTTCAGATCC
  TCAGCTGCCC TGCCTCCCAC TCCAACTCCA GAGAGCAGCC AGCGGGTCAC AGTGGTCCCG
  C
  CCATGGACCT GGAGCCTAGA GAGAAATGAG CTCGGAAATC CGGAGCAAAT GAGGAGTGGT
  CCCTGAAACG TCAGTGGCCC TGGATGTCGT GACTGCTAAA G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145288235	ENSMUSSNP5453525	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs107910871					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21695004 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	5 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	1526 bp distal
Rr522959	regulatory region 522959	581 bp distal
Rr522960	regulatory region 522960	1038 bp distal
Rr522961	regulatory region 522961	within coordinates
Rr522962	regulatory region 522962	16 bp proximal
Rr522963	regulatory region 522963	1392 bp proximal
Tssr142877	transcription start site region 142877	876 bp downstream
Tssr142878	transcription start site region 142878	469 bp downstream
Tssr142879	transcription start site region 142879	165 bp upstream