rs107912670 SNP Detail

Summary

• ID
  rs107912670
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3076031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAAGTAAGCA AGCAAGCCAG CAAGCACAGG AGCACACTCT
  CGTGGAGGCC CACACCCTCC CTGTGCCTAC CCAAGATGTG TCAGTCAGAG AAGCATCCAG
  G
  ACCGGAGCTC CAAGCAGCAG CAAAATGGTG AGATGCTGCC CATGAGACCT AACCCTCAAT
  GTACCCCGGC ATAGTTTCAG GAGGGTCAGA CACCAAGTCC A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss131630089	ENSMUSSNP1201274	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs107912670					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3076031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1895 bp distal
Cpgi2432	CpG island 2432	1108 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Pisd-ps1	phosphatidylserine decarboxylase, pseudogene 1	within coordinates
Rr441450	regulatory region 441450	2000 bp distal
Rr441453	regulatory region 441453	1569 bp distal
Rr441454	regulatory region 441454	1586 bp distal
Rr441455	regulatory region 441455	1361 bp distal
Rr441456	regulatory region 441456	68 bp distal
Rr441457	regulatory region 441457	1851 bp proximal
Tssr100004	transcription start site region 100004	2000 bp downstream
Tssr100005	transcription start site region 100005	1977 bp downstream