rs107912994 SNP Detail

Summary

• ID
  rs107912994
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTAGTA GAATAGGTAA
  GCTCTGTCCA GTAAGAGATC TTGTCTCAAT ACTGTAACTA AAAAATGGCC CAGCCAGTAA
  AAGATGCTTG CTGCCAAGTC TAATGACCTG AATTCAATAT TCAGTCTCTC TGATCCCTCA
  CATGATGAAA GGAGACAACC AACACCTGAA ATCTGTCGTC TAACTTACAC ACGGACACAC
  A
  GACACACGGA CACACACACA CACTATGGGC CAGATATTAG GGATAATAGG CAGCTCAAAG
  AGAGATTTGG GGTGGGGAAA GAACCCACAT GAGTGGACAG GGAGCTCTGA GATCCTGTCT
  AGAAACAAGT ACTGCAGGGG CTGAGAGAGT ATGCTAGGAA TATTCTGGAA GCTTTTAGCA
  GCTGGACAAC AAGACTAGGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144517241	ENSMUSSNP7044889	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107912994					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721316 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	538 bp downstream
Myl10	myosin, light chain 10, regulatory	684 bp upstream
Rr127468	regulatory region 127468	316 bp distal
Rr127469	regulatory region 127469	485 bp proximal
Tssr49256	transcription start site region 49256	933 bp downstream
Tssr49257	transcription start site region 49257	358 bp upstream
Tssr49258	transcription start site region 49258	494 bp upstream
Tssr49259	transcription start site region 49259	557 bp upstream
Tssr49260	transcription start site region 49260	622 bp upstream
Tssr49261	transcription start site region 49261	1134 bp upstream
Tssr49262	transcription start site region 49262	1152 bp upstream
Tssr49263	transcription start site region 49263	1195 bp upstream
Tssr49264	transcription start site region 49264	1205 bp upstream
Tssr49265	transcription start site region 49265	1659 bp upstream
Tssr49266	transcription start site region 49266	1681 bp upstream
Tssr49267	transcription start site region 49267	1751 bp upstream