rs107913679 SNP Detail

Summary

• ID
  rs107913679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44130129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT CTTTACTCCT GGACAACCCC
  Y
  CAGTATCATC TTTTTAGTAT TTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149112905	ENSMUSSNP3475446	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107913679					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44130129 () rs orientation: forward

Symbol	Name	Function Class
Rr646103	regulatory region 646103	1879 bp proximal
Tssr2227	transcription start site region 2227	1685 bp downstream
Tssr2228	transcription start site region 2228	622 bp downstream
Tssr2229	transcription start site region 2229	347 bp downstream
Tssr2230	transcription start site region 2230	164 bp downstream
Tssr2231	transcription start site region 2231	37 bp downstream
Tssr2232	transcription start site region 2232	136 bp upstream
Tssr2233	transcription start site region 2233	169 bp upstream
Tssr2234	transcription start site region 2234	328 bp upstream
Tssr2235	transcription start site region 2235	962 bp upstream
Tssr66287	transcription start site region 66287	1984 bp downstream
Tssr66288	transcription start site region 66288	1959 bp downstream
Tssr66289	transcription start site region 66289	1877 bp downstream
Tssr66290	transcription start site region 66290	1839 bp downstream
Tssr66291	transcription start site region 66291	1813 bp downstream
Tssr66292	transcription start site region 66292	1781 bp downstream
Tssr66293	transcription start site region 66293	1759 bp downstream
Tssr66294	transcription start site region 66294	1735 bp downstream
Tssr66295	transcription start site region 66295	1470 bp downstream
Tssr66296	transcription start site region 66296	1299 bp downstream
Tssr66297	transcription start site region 66297	1275 bp downstream
Tssr66298	transcription start site region 66298	1220 bp downstream
Tssr66299	transcription start site region 66299	1200 bp downstream
Tssr66300	transcription start site region 66300	1177 bp downstream
Tssr66301	transcription start site region 66301	1161 bp downstream
Tssr66302	transcription start site region 66302	1120 bp downstream
Tssr66303	transcription start site region 66303	1111 bp downstream
Tssr66304	transcription start site region 66304	1106 bp downstream
Tssr66305	transcription start site region 66305	1067 bp downstream
Tssr66306	transcription start site region 66306	1013 bp downstream
Tssr66307	transcription start site region 66307	964 bp downstream
Tssr66308	transcription start site region 66308	947 bp downstream
Tssr66309	transcription start site region 66309	897 bp downstream
Tssr66310	transcription start site region 66310	828 bp downstream
Tssr66311	transcription start site region 66311	805 bp downstream
Tssr66312	transcription start site region 66312	786 bp downstream
Tssr66313	transcription start site region 66313	776 bp downstream
Tssr66314	transcription start site region 66314	758 bp downstream
Tssr66315	transcription start site region 66315	751 bp downstream
Tssr66316	transcription start site region 66316	686 bp downstream
Tssr66317	transcription start site region 66317	670 bp downstream
Tssr66318	transcription start site region 66318	629 bp downstream
Tssr66319	transcription start site region 66319	601 bp downstream
Tssr66320	transcription start site region 66320	577 bp downstream
Tssr66321	transcription start site region 66321	553 bp downstream
Tssr66322	transcription start site region 66322	537 bp downstream
Tssr66323	transcription start site region 66323	499 bp downstream
Tssr66324	transcription start site region 66324	446 bp downstream
Tssr66325	transcription start site region 66325	405 bp downstream
Tssr66326	transcription start site region 66326	395 bp downstream
Tssr66327	transcription start site region 66327	375 bp downstream
Tssr66328	transcription start site region 66328	357 bp downstream
Tssr66329	transcription start site region 66329	318 bp downstream
Tssr66330	transcription start site region 66330	305 bp downstream
Tssr66331	transcription start site region 66331	291 bp downstream
Tssr66332	transcription start site region 66332	258 bp downstream
Tssr66333	transcription start site region 66333	223 bp downstream
Tssr66334	transcription start site region 66334	217 bp downstream
Tssr66335	transcription start site region 66335	206 bp downstream
Tssr66336	transcription start site region 66336	192 bp downstream
Tssr66337	transcription start site region 66337	176 bp downstream
Tssr66338	transcription start site region 66338	92 bp downstream
Tssr66339	transcription start site region 66339	60 bp downstream
Tssr66340	transcription start site region 66340	within coordinates
Tssr66341	transcription start site region 66341	12 bp upstream
Tssr66342	transcription start site region 66342	74 bp upstream
Tssr66343	transcription start site region 66343	106 bp upstream
Tssr66344	transcription start site region 66344	251 bp upstream
Tssr66345	transcription start site region 66345	284 bp upstream
Tssr66346	transcription start site region 66346	340 bp upstream
Tssr66347	transcription start site region 66347	378 bp upstream
Tssr66348	transcription start site region 66348	419 bp upstream
Tssr66349	transcription start site region 66349	443 bp upstream
Tssr66350	transcription start site region 66350	471 bp upstream
Tssr66351	transcription start site region 66351	479 bp upstream
Tssr66352	transcription start site region 66352	515 bp upstream
Tssr66353	transcription start site region 66353	589 bp upstream
Tssr66354	transcription start site region 66354	603 bp upstream
Tssr66355	transcription start site region 66355	630 bp upstream
Tssr66356	transcription start site region 66356	647 bp upstream
Tssr66357	transcription start site region 66357	661 bp upstream
Tssr66358	transcription start site region 66358	673 bp upstream
Tssr66359	transcription start site region 66359	699 bp upstream
Tssr66360	transcription start site region 66360	711 bp upstream
Tssr66361	transcription start site region 66361	737 bp upstream
Tssr66362	transcription start site region 66362	769 bp upstream
Tssr66363	transcription start site region 66363	786 bp upstream
Tssr66364	transcription start site region 66364	819 bp upstream
Tssr66365	transcription start site region 66365	839 bp upstream
Tssr66366	transcription start site region 66366	859 bp upstream
Tssr66367	transcription start site region 66367	887 bp upstream
Tssr66368	transcription start site region 66368	909 bp upstream
Tssr66369	transcription start site region 66369	943 bp upstream
Tssr66370	transcription start site region 66370	985 bp upstream
Tssr66371	transcription start site region 66371	1410 bp upstream
Tssr66372	transcription start site region 66372	1573 bp upstream
Tssr66373	transcription start site region 66373	1863 bp upstream
Tssr66374	transcription start site region 66374	1921 bp upstream
Tssr66375	transcription start site region 66375	1932 bp upstream
Tssr66376	transcription start site region 66376	1945 bp upstream
Tssr66377	transcription start site region 66377	1984 bp upstream
Tssr72201	transcription start site region 72201	1754 bp upstream
Tssr72202	transcription start site region 72202	897 bp upstream
Tssr72203	transcription start site region 72203	517 bp upstream
Tssr72204	transcription start site region 72204	70 bp downstream