rs107915121 SNP Detail

Summary

• ID
  rs107915121
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAC ACACGGACAC ACACACACAC
  W
  ATGGGCCAGA TATTAGGGAT AATAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss144517264	ENSMUSSNP384952	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321700209	CHEV_5_137168356	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107915121					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721340 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	514 bp downstream
Myl10	myosin, light chain 10, regulatory	660 bp upstream
Rr127468	regulatory region 127468	340 bp distal
Rr127469	regulatory region 127469	461 bp proximal
Tssr49256	transcription start site region 49256	957 bp downstream
Tssr49257	transcription start site region 49257	334 bp upstream
Tssr49258	transcription start site region 49258	470 bp upstream
Tssr49259	transcription start site region 49259	533 bp upstream
Tssr49260	transcription start site region 49260	598 bp upstream
Tssr49261	transcription start site region 49261	1110 bp upstream
Tssr49262	transcription start site region 49262	1128 bp upstream
Tssr49263	transcription start site region 49263	1171 bp upstream
Tssr49264	transcription start site region 49264	1181 bp upstream
Tssr49265	transcription start site region 49265	1635 bp upstream
Tssr49266	transcription start site region 49266	1657 bp upstream
Tssr49267	transcription start site region 49267	1727 bp upstream