rs107917770 SNP Detail

Summary

• ID
  rs107917770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28395779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAAACAC TCACGTTCCC
  CAGGGCATAT GGGAAAAGCC AGTACTGCAG GGAGAATTGT CCCGCAGGAA GGACTGTCAG
  GGCTCCATCC TTCATAATGC TGTCCCCCCA CCCCCACCCC TCGGGCATCT TCCCACAAAG
  TGCAGGAAGG ATTGTCCCTC GGGGTGCAGT CCATGCAGAA GGACCATCTC TCACGGAGAC
  Y
  GTCCACAGGG AGGACCGTCC CTAAGTCCCT CAGGGTGCTG AGCCCCAGTT CACCTTCTGA
  CAGAGCGGGA GAGAAGCGTC CCTTAGGGTG AAGTCCCAGG GGGAGGACCA TCCAGCAGAG
  ATGACTGTCG GGACGCCATC CCTTGGGGCG CCGTTGCACA GGGCGCTGGG AGGACTGTCC
  CTCGGAGTCC CATCCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352119	CHEV_17_28313750	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107917770					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28395779 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	within coordinates
Rr339474	regulatory region 339474	within coordinates
Scube3	signal peptide, CUB domain, EGF-like 3	1951 bp downstream
Tssr143392	transcription start site region 143392	325 bp upstream
Tssr143393	transcription start site region 143393	591 bp upstream
Tssr147097	transcription start site region 147097	836 bp downstream
Zfp523	zinc finger protein 523	357 bp upstream