rs107931625 SNP Detail

Summary

• ID
  rs107931625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137722560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT AACATTTCAT CATCTCCCCC
  R
  CCCCCACCCC CCATCCTTGG ACTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147628370	ENSMUSSNP3524471	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107931625					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137722560 () rs orientation: forward

Symbol	Name	Function Class
BE691133	expressed sequence BE691133	1889 bp upstream
Cpgi15142	CpG island 15142	763 bp distal
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	522 bp upstream
Rr100351	regulatory region 100351	within coordinates
Rr398623	regulatory region 398623	1651 bp downstream
Tssr39805	transcription start site region 39805	1775 bp downstream
Tssr39806	transcription start site region 39806	1745 bp downstream
Tssr39807	transcription start site region 39807	1516 bp downstream
Tssr39808	transcription start site region 39808	1316 bp downstream
Tssr39809	transcription start site region 39809	1143 bp downstream
Tssr39810	transcription start site region 39810	432 bp downstream
Tssr39811	transcription start site region 39811	579 bp upstream
Tssr44154	transcription start site region 44154	1945 bp upstream
Tssr44155	transcription start site region 44155	490 bp upstream