rs107933263 SNP Detail

Summary

• ID
  rs107933263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCAGTG ATGTTCTTGG
  TGACTTTTGC TTCCACGTCA TATCTCTCTT CATCCACTTT GTCCACCCGA GCGTGAAGCT
  GTCGGCATAA GTCCTGGTGA AGGAACGCGT GGATGCTGAG AGGGAGGCTG GAGATTGGGT
  TCCCTGGTCT GAGAGAGGAG ACCTCTGGGT CTGAGGAAGG AGGCCTAGGC TCTGGACCCC
  Y
  GAGTTTGAGA GAGGAGTGCT GGGGTCTGGA CTCCTGAGTC TGAGGAAGGA GGGGGTGAAA
  GGAAGCTGAC ACCGGAATCT GCACTCCAGG GAACTTAAAG AAATATGGCC GGGAACTAAG
  AATTCTGAGA CCTGGCAGAT AGAGGCTGGA GAAATACACT GGGTTTTGAA GCTGTAGGGC
  TGAACGTATT GCTTGGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148179408	ENSMUSSNP3815810	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs107933263					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	892 bp proximal
Rr641974	regulatory region 641974	1769 bp distal
Rr641975	regulatory region 641975	794 bp proximal
Rr641976	regulatory region 641976	1883 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1224 bp downstream
Tssr64335	transcription start site region 64335	153 bp downstream
Tssr64336	transcription start site region 64336	1035 bp upstream
Tssr64337	transcription start site region 64337	1178 bp upstream
Tssr70484	transcription start site region 70484	1241 bp downstream
Tssr70485	transcription start site region 70485	1792 bp downstream