rs107934237 SNP Detail

Summary

• ID
  rs107934237
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCTGGAATAT GGTGAAAAAA ATCGAAAAAT GTGGAAAATG
  AGACACACAC ACTGTAGGAT CTGAAATATG GCAAGAAACA CTGAAAAATA TGGAAAATGA
  G
  AAATGCACAC TGTAGGACCT GGAATATGTC TATAAAACCG GAAAACGTGG AAAATGAGAC
  ACACAAACTG TAGGAACTGG AATCTGGCGA GAAAAAATGA C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145930167	ENSMUSSNP5156669	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs107934237					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	within coordinates
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	1422 bp downstream
Tssr36319	transcription start site region 36319	1164 bp downstream
Tssr36320	transcription start site region 36320	654 bp downstream
Tssr36321	transcription start site region 36321	536 bp downstream
Tssr36322	transcription start site region 36322	467 bp downstream
Tssr36323	transcription start site region 36323	277 bp downstream
Tssr36324	transcription start site region 36324	162 bp downstream
Tssr40800	transcription start site region 40800	1377 bp upstream
Tssr40801	transcription start site region 40801	1144 bp upstream
Tssr40802	transcription start site region 40802	730 bp upstream
Tssr40803	transcription start site region 40803	684 bp upstream