rs107934573 SNP Detail

Summary

• ID
  rs107934573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125433741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATCCATT CTGGAAAAGA
  AAAGTTATGA CATCACAGCA TCTCGGCTGA GACATGGCTA CTTCTTACTG CTCTGGGCTG
  CTCTCAGTTA GGGATCAGGT AAGAGAGAGC AGGTGAAGCA GAAAGATACT AAAAATGTGC
  AGTTTGTAAG GAAAAGGAAT GAATGTGAAT ACATTTAAAC TTACAGACAT GGCAAGCCTG
  R
  AGAAAACAAC ACTAACATTA GAGATTACTG CAGAGGGGCC TCATGTTCCT GACTGAATGT
  ATCTGAGTTA GAGTTTACCT GGGCATCAGA GATGGATGTT ATGATTAAAG CTGCTATGTT
  TGGGTGTAAA GTTGAGAAAG GGCAGAAGGA GGATTGCTAG TCTAGATCAT CAACTTCTGA
  GCATTTAGAA TCACCTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147482249	ENSMUSSNP1700744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107934573					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125433741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep152	centrosomal protein 152			Intron
				Noncoding-Transcript-Variant
Gm75597	predicted gene, 75597			within coordinates
Rr564236	regulatory region 564236			714 bp proximal
Tssr19898	transcription start site region 19898			165 bp downstream