rs107936493 SNP Detail

Summary

• ID
  rs107936493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18997631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGCTCACCCC AAACCCCAGC CTGTTTGGCT GTTTGAGACA
  AGGTTTCTCT GTGTAGCCCT GGCTGTCTTG GAACTCACTG CACTGTATAT ATAGACCAGG
  Y
  TGGCCTCGAA CTCAGAGATC CACCTGCCTC TGCCTCTTGA GTGCTGGGAC TAAAGGCATG
  AACTACCACA CTGGCTGCGT TTTGTTTTTG TTTTTTAAAA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148471764	ENSMUSSNP6606129	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107936493					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18997631 () rs orientation: forward

Symbol	Name	Function Class
Tssr70882	transcription start site region 70882	1647 bp upstream
Tssr70883	transcription start site region 70883	763 bp downstream
Tssr70884	transcription start site region 70884	1104 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates