rs107937335 SNP Detail

Summary

• ID
  rs107937335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105829732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGGAAC AGGCTGGCTC
  TGGCCTCTGT TCCCTTTGCC TCAGTGCTGG CAATGGCTGG GACTCAACAC AAAAGCTACC
  ACCAATGCCA CCAGCACAGA GACATCAGAG CTCCAGCTAC TGTCCCTTCC CTAGACAGGC
  AGGCAGGACT GGCCTCCGCA GCCAACTGCT TCTCCCAGCA GCAGTGAGCA CCAGAAGATG
  Y
  ACGCAGCAGC CAACAGGAGC TGTGGCAGCC ACTTCCCCAC CCTAGCTAGA GCCCGTGCTG
  GCCCAGCTGT GCTTGGGCCT GCGTCCCCAG CTCCTCCAGT TGATCAGCTC CAGCTCCACC
  TCCCAATTCT CTGACAGCAA CGCCTCCATT TGAAAAGAGG ACCAAGGCAG TTAATAATAC
  ACTCTCCGAA AACAGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132765656	ENSMUSSNP3000208	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107937335					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105829732 () rs orientation: forward

Symbol	Name	Function Class
Cyb561	cytochrome b-561	within coordinates
Rr238672	regulatory region 238672	within coordinates
Rr248093	regulatory region 248093	1733 bp distal
Tssr111270	transcription start site region 111270	1992 bp upstream
Tssr111271	transcription start site region 111271	1973 bp upstream
Tssr111272	transcription start site region 111272	1035 bp upstream
Tssr111273	transcription start site region 111273	339 bp upstream
Tssr111274	transcription start site region 111274	62 bp downstream
Tssr111275	transcription start site region 111275	1048 bp downstream
Tssr111276	transcription start site region 111276	1081 bp downstream
Tssr111277	transcription start site region 111277	1301 bp downstream