rs107938016 SNP Detail

Summary

• ID
  rs107938016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992364 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A CGACAAACTC CTCAAGAGCC ACGGGTGTAT AATAGTACTA
  GTTTTCATTT GAATTATACA CTATGCTTTG TGCATAATGT GGATAAACCT TTTACACCCT
  S
  TATATTTTTA AAGAAAAAGA TTATCTCTAA TTGGGCAGAT CCCATTAGCC AAAATAAGGG
  GAGCTCTGGA GTGTTGTTTA ATGCTTTAAC ACAAGTTGCT C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144937104	ENSMUSSNP2496152	ENSEMBL	ENSEMBL_Sanger	r	SNP			C
ss148337169	ENSMUSSNP1635879	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss148929759	ENSMUSSNP2739433	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107938016					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992364 () rs orientation: reverse

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates