rs107938250 SNP Detail

Summary

• ID
  rs107938250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCTTTGG TTGTAGCCAT
  TTTCCTTCAG GAGCATAAGC TCTGCTGAGT TGAGAGGGGC AGGGCAGGGG CAGGGCAGGG
  GCAGGGACAA CACCATAAGT GCTGATCCTT GAAAAAGAAT ATGTCTCCTG CCAGACTCAT
  CAAGGTGGGG TGGGGACTTG AGTGGGGAGA GGGTCTTCAG TGTGGGTAGT CACTGTCCTG
  Y
  GTTTTAATCT CCATCCCCAG GTCCAAAGCA TCCAGGTCCC TAACCAGGAG TTCGGCCTGA
  GTGAGAATGA GCCTGGCACC AATTTTGTCT ACGCCCAATT TGACGGGATC ATGGGCCTGG
  CCTACCCCGG CCTGTCTTCA GGGGGCGCCA CCACCGCCTT GCAGGGCATG TTGGGGGAGG
  GCGCTCTGTC CCAGCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352974	MGP_WTSI_17_47867527	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107938250					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352974	MGP_WTSI_17_47867527	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041503 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	131 bp proximal
Tssr5147	transcription start site region 5147	1827 bp downstream
Tssr5148	transcription start site region 5148	1265 bp upstream
Tssr5149	transcription start site region 5149	905 bp upstream
Tssr145004	transcription start site region 145004	1836 bp downstream
Tssr145005	transcription start site region 145005	1815 bp downstream
Tssr145006	transcription start site region 145006	1786 bp downstream
Tssr145007	transcription start site region 145007	1754 bp downstream
Tssr145008	transcription start site region 145008	1733 bp downstream
Tssr145009	transcription start site region 145009	1705 bp downstream
Tssr145010	transcription start site region 145010	1323 bp downstream
Tssr145011	transcription start site region 145011	1304 bp downstream
Tssr145012	transcription start site region 145012	1287 bp downstream
Tssr145013	transcription start site region 145013	1235 bp downstream
Tssr145014	transcription start site region 145014	441 bp downstream
Tssr145015	transcription start site region 145015	426 bp downstream
Tssr145016	transcription start site region 145016	422 bp downstream
Tssr145017	transcription start site region 145017	20 bp upstream
Tssr145018	transcription start site region 145018	32 bp upstream
Tssr145019	transcription start site region 145019	63 bp upstream
Tssr145020	transcription start site region 145020	84 bp upstream
Tssr145021	transcription start site region 145021	110 bp upstream
Tssr145022	transcription start site region 145022	142 bp upstream
Tssr145023	transcription start site region 145023	169 bp upstream
Tssr145024	transcription start site region 145024	280 bp upstream
Tssr145025	transcription start site region 145025	624 bp upstream
Tssr145026	transcription start site region 145026	880 bp upstream
Tssr145027	transcription start site region 145027	1813 bp upstream
Tssr145028	transcription start site region 145028	1841 bp upstream
Tssr145029	transcription start site region 145029	1882 bp upstream
Tssr148459	transcription start site region 148459	1777 bp upstream
Tssr148460	transcription start site region 148460	1725 bp upstream
Tssr148461	transcription start site region 148461	1713 bp upstream
Tssr148462	transcription start site region 148462	1670 bp upstream
Tssr148463	transcription start site region 148463	1297 bp upstream
Tssr148464	transcription start site region 148464	1212 bp upstream
Tssr148465	transcription start site region 148465	451 bp upstream
Tssr148466	transcription start site region 148466	417 bp upstream
Tssr148467	transcription start site region 148467	51 bp downstream
Tssr148468	transcription start site region 148468	82 bp downstream
Tssr148469	transcription start site region 148469	172 bp downstream
Tssr148470	transcription start site region 148470	1849 bp downstream
Tssr148471	transcription start site region 148471	1868 bp downstream
Tssr148472	transcription start site region 148472	1884 bp downstream
Tssr148473	transcription start site region 148473	1901 bp downstream
Tssr148474	transcription start site region 148474	1920 bp downstream