rs107939121 SNP Detail

Summary

• ID
  rs107939121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85327793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT TTTGAGTTGA TATCTCTTCC
  Y
  TCCCCTAACC CCCTCCTCTC CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145390200	ENSMUSSNP1559077	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322750933	CHEV_8_87125063	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107939121					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85327793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit			Intron
				Noncoding-Transcript-Variant
Cpgi20697	CpG island 20697			261 bp distal
Cpgi20698	CpG island 20698			385 bp proximal
Gm64375	predicted gene, 64375			within coordinates
Rr666538	regulatory region 666538			660 bp distal
Rr666539	regulatory region 666539			831 bp proximal
Tssr78406	transcription start site region 78406			196 bp upstream
Tssr78407	transcription start site region 78407			256 bp upstream
Tssr78408	transcription start site region 78408			299 bp upstream