rs107939203 SNP Detail

Summary

• ID
  rs107939203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112980131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC ACACCTTCTG CACTCAGTCA
  R
  CACTCAGCAC TCACCCTCAG CACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss138730680	ENSMUSSNP2559982	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324172780	CHEV_12_114254722	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs107939203					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112980131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5198	CpG island 5198			1292 bp distal
Pacs2	phosphofurin acidic cluster sorting protein 2			Intron
				Noncoding-Transcript-Variant
Rr473707	regulatory region 473707			1968 bp distal
Rr473709	regulatory region 473709			1808 bp distal
Rr473710	regulatory region 473710			within coordinates
Tssr115452	transcription start site region 115452			1998 bp downstream
Tssr115453	transcription start site region 115453			1972 bp downstream
Tssr115454	transcription start site region 115454			1954 bp downstream
Tssr115455	transcription start site region 115455			1943 bp downstream