rs107939925 SNP Detail

Summary

• ID
  rs107939925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144104155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTCTCCCACC GTTGCACTGA TTTCCACACA AGGCAATGGT
  AAGAATGTGC CGCCACAGGC AGAGTCACCC TAGTGGTATC ACAGTGCAAT TGCATCTGGT
  R
  TCTCATTTCA GAAGGCAAGG ATCTGGAGAA AATTCCATTG TGGGAATAAG GAAGCCAGTA
  TGCTCACATG TTTTATCTCC TATGCATGGC CACATCCTCT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136030774	ENSMUSSNP4452081	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107939925					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144104155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1603 bp distal
Gm65349	predicted gene, 65349	1655 bp upstream
Rr586643	regulatory region 586643	1676 bp distal
Rr586644	regulatory region 586644	1506 bp distal
Rr586645	regulatory region 586645	916 bp proximal
Rr586646	regulatory region 586646	1532 bp proximal
Rr586647	regulatory region 586647	1916 bp proximal