rs107941207 SNP Detail

Summary

• ID
  rs107941207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AACCTCAGCA CCCCTTCATT TAGGGTTTTC TTCTTTTCTT
  TTCTTTTCTT TTCTTTTCTT TTCCTTTTCT TTTCTCTTCT CTTCTTTTCT TTCTTTCTTT
  Y
  TTTTTTTTGA GGGATTTCAT CATGTAGCCA TGAAAACCTC AAAGTTCTAG GAAACTGCAA
  ACTATTTGGA AACTCTGTGC CAACCGTTAC AGCCAAAGGT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148122729	ENSMUSSNP1647824	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs107941207					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590786 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1615 bp distal
Rr516711	regulatory region 516711	71 bp distal
Rr516712	regulatory region 516712	917 bp proximal
Rr516713	regulatory region 516713	1994 bp proximal
Tssr138713	transcription start site region 138713	189 bp upstream
Tssr141324	transcription start site region 141324	1714 bp upstream
Tssr141325	transcription start site region 141325	1685 bp upstream
Tssr141326	transcription start site region 141326	1644 bp upstream
Tssr141327	transcription start site region 141327	1621 bp upstream
Tssr141328	transcription start site region 141328	601 bp upstream
Tssr141329	transcription start site region 141329	367 bp downstream
Tssr141330	transcription start site region 141330	382 bp downstream
Tssr141331	transcription start site region 141331	395 bp downstream
Tssr141332	transcription start site region 141332	423 bp downstream
Tssr141333	transcription start site region 141333	1258 bp downstream
Tssr141334	transcription start site region 141334	1413 bp downstream