rs107941779 SNP Detail

Summary

• ID
  rs107941779
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45318476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTAATTC AGATACTACT
  TCATGGAAAA TTTGCTTTAA AATGTTACAA AACTGAACTT TAAAATGAAG CTAAGGAAAC
  AATAAATTTG TTCTCTTCAA CATTAAAAAT ACCCACTGTT GAGCTGGAGA TGGCTCGTGG
  GCTAAGAGTA CTTACTGCTC TTGTAGGGGA CCCAGCTTTG GTTTCTAGCA CCCGTGTAGC
  W
  GCTCACAACC TGTCATAACT CAAGTTTCAG GGGACCTGAC CTTCCTGTCT GACCTCCACA
  AGAAGCTGTC ACACAGCGTG CAAAAACATA CATGTAGGCA CACTTTCCTG TGCATACTTT
  AAAAATGCCT TGTAAGTCCC CACTGTTGTG GGTGATTACA AAACCTAGCG GGAATCATTA
  CACCTTTTCC GGCTTCCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251654	ENSMUSSNP2414310	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107941779					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45318476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	1556 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1883 bp upstream
Tssr37060	transcription start site region 37060	1897 bp upstream
Tssr37061	transcription start site region 37061	1909 bp upstream
Tssr37062	transcription start site region 37062	1942 bp upstream
Tssr41531	transcription start site region 41531	1794 bp downstream
Tssr41532	transcription start site region 41532	1900 bp downstream
Tssr41533	transcription start site region 41533	1986 bp downstream