rs107942038 SNP Detail

Summary

• ID
  rs107942038
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6405713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATGAGA TTCTTTGTGA
  CAAGGGCATC TTCCTTTCCG AGACAGATAA AGACACCTTC ATGCCGATGC GGCTCCACCA
  TCACATTCTT CCCTGACTGG TTTCCTCTCT TGTCTCCCCG GCCACCACCT TGACCCCTGT
  TGCCCCCAGA TTGGAAGCCT CCACCTTGGC CACGTCCACC TCCTCATCCC CTGAAGCCAC
  S
  ACCCCTTCTG CCTCCTTGGC CTCCTCCTCT ATCACCAAAG CCACCTCTGC CACCGAAGCC
  GCCACCACCG GGGCTGAAAC TTGGTTTCAT TACTGTGTTC TGGTCTCGAA ACTCAGGCAT
  TCCTGACTCC ATGAGTCTCA GGCTTTAAGA ATAATTTATT TTATAAGTCT GCATAGGATA
  CAACTTCTAT AAATATAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145085328	ENSMUSSNP1030735	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss325290260	CHEV_17_6355438	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107942038					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6405713 () rs orientation: forward

Symbol	Name	Function Class
Gm2792	predicted gene 2792	within coordinates
Gm17879	predicted gene, 17879	within coordinates
Gm29719	predicted gene, 29719	1375 bp downstream