rs107946572 SNP Detail

Summary

• ID
  rs107946572
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17747333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGGGGG ATTGTGGGTT
  GTAGTACTTG TACTGAATGC CATTGTGTGG TCGAGGGGCA GAAGGAACAG GATCAATTCC
  ACTCATCAGA GCCTAAGGCA CTGGGCCAGC AGATGTCTGG AGGCAAGGAG TATGGGGATG
  GCAGTTGGGG GCCAGTGGGA GGTTGGCCAG GCTAGAGGTG CAGCTGGAAC ACCCCCCCCC
  M
  CACACACACA CACAACTGGA CTCTTAGCTC AGGTAACAAC AGCTGGTGAA GGCCAGCTGG
  CATCCTGTCC TCCTCTCCCA CCAGTGTTAG TACTCACTAC ACCCAGTATA TTCAGGATAC
  AACAGCCTCT GAGGGCTTGT TCCATGCAAT CCTGGGTGGG CTTTCAATTC AACGCCCTTT
  CTAGCACACG TGAGAAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147880357	ENSMUSSNP1425275	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107946572					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17747333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8035	CpG island 8035	737 bp distal
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Rr325016	regulatory region 325016	within coordinates
Rr391413	regulatory region 391413	within coordinates
Slc25a1	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	1250 bp upstream
Tssr140224	transcription start site region 140224	1598 bp upstream
Tssr140225	transcription start site region 140225	1447 bp upstream
Tssr140226	transcription start site region 140226	1254 bp upstream