rs107948916 SNP Detail

Summary

• ID
  rs107948916
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40155575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGTCTTC GTCGGTAGGC ATCGGTGTGT CGGCATCGGT
  CTCTCTCTCG TGTCGGTGTC GCCTCCTCGG GCTCCCGGGG GGCCGTCGTG TTTCGGGTCG
  G
  CTCGGCGCTG CAGGTGTGGT GGGACTGCTC AGGGGAGTGG TGCAGTGTGA TTCCCGCCGG
  TTTTGCCTCG CGTGCCCTGA CCGGTCCGAC GCCCGAGCG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385439	CHEV_17_39981629	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs107948916					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40155575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	487 bp proximal
Rn18s-rs5	18s RNA, related sequence 5	1670 bp upstream
Rr331227	regulatory region 331227	975 bp distal
Rr331228	regulatory region 331228	within coordinates
Rr331229	regulatory region 331229	426 bp proximal
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	1663 bp upstream
Tssr144603	transcription start site region 144603	1768 bp upstream
Tssr144604	transcription start site region 144604	1826 bp upstream
Tssr144605	transcription start site region 144605	1876 bp upstream
Tssr144606	transcription start site region 144606	1934 bp upstream
Tssr148051	transcription start site region 148051	1355 bp upstream
Tssr148052	transcription start site region 148052	1141 bp upstream
Tssr148053	transcription start site region 148053	1035 bp upstream
Tssr148054	transcription start site region 148054	523 bp upstream
Tssr148055	transcription start site region 148055	274 bp upstream
Tssr148056	transcription start site region 148056	33 bp downstream
Tssr148057	transcription start site region 148057	438 bp downstream
Tssr148058	transcription start site region 148058	1059 bp downstream
Tssr148059	transcription start site region 148059	1094 bp downstream
Tssr148060	transcription start site region 148060	1215 bp downstream
Tssr148061	transcription start site region 148061	1324 bp downstream
Tssr148062	transcription start site region 148062	1839 bp downstream
Tssr148063	transcription start site region 148063	1970 bp downstream