rs107949335 SNP Detail

Summary

• ID
  rs107949335
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27257794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATTCCT CTCTTCCATG
  TCTGTGGGCT AGCCTCACAG CTCAATCTAC TTCAGGATTC CTGTGAACCA CAGAGACCGA
  GGGGGAAGGA ATATGGGTGC TGTTGCTGTC TGGGGGCAGG GAGAGAGGGA GAGGGGTGTG
  TGTGTGTGTG TGTTGTGTGT GTGTGTCAAT GCAGGCACGA GGCCTCTCCC CAGCCCGGGG
  C
  GGGGGGTGGG GGCGGGGGCA TCCAGGGCTG GCTTCTGCGG GAGGCCTGGC TTGGCAGACA
  AGGTGATGAT GTCACACATT CTAAACAAGG AGCTTCAGTG GAAGGAGGGG TCCCCAGCAG
  TGAGTGGAAG CCCACAGACA CCTCTGGGTC TGATCTGGAG ACTGGAGCGT CTCCACCTCT
  GTTATGAGAG CCAGGAAGCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130699958	NCBIM37_NT_039649_chr17_27175765	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107949335					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130699958	NCBIM37_NT_039649_chr17_27175765	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27257794 () rs orientation: forward

Symbol	Name	Function Class
Gm65707	predicted gene, 65707	107 bp downstream
Rr330035	regulatory region 330035	1194 bp distal
Rr392460	regulatory region 392460	within coordinates
Tssr143302	transcription start site region 143302	993 bp downstream
Tssr143303	transcription start site region 143303	684 bp downstream
Tssr143304	transcription start site region 143304	188 bp downstream
Tssr146997	transcription start site region 146997	374 bp upstream
Tssr146998	transcription start site region 146998	709 bp downstream