rs107949539 SNP Detail

Summary

• ID
  rs107949539
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:13043327 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A TTTGCCTGAA GTTCTCTTTC TTTGTAGGGT CTTTGTGTGA
  TTTAGGGATC AGAGTAACTC TGGCTTCATA GAATGAATTA GGTAGTGTTC CTTCTGTTTC
  T
  ATTCTGTGGA ATAGTTTGAG GAGTATTGGT AACAGGTCTT CTTTGAAGGT CTGGTAGAAT
  TTTGCACTAA AACCAATCTG GCCCTGAGCT TTTTAAAATA G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147774734	ENSMUSSNP6591552	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107949539					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:13043327 () rs orientation: reverse

Symbol	Name	Function Class
Airn	antisense Igf2r RNA	within coordinates
Rr392300	regulatory region 392300	674 bp upstream
Tssr142657	transcription start site region 142657	1023 bp downstream