rs107952286 SNP Detail

Summary

• ID
  rs107952286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84493267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGTTCG AGTCCAAGTG
  CTCGGAGGGG CCTCCAAGTC TGCCGCAGTG TCGCCCTCCC CAACCGGTGG CCCCCGCTGT
  GCCTTTCCCA ACCCCTCGCG GGCGCCCCCT TGCCTCAGTC GTCGGAGATG GAGAGGCGGC
  TGAAGATGGG TAGGCGACGG CCAGGGTCCA GGCTGGGGGA CTCGGAGCCG CTGAGGCTGC
  Y
  GGAGCTCAGC GAGCCGCTCA GGTAGCTGTC GCGGTCCGAG AGCGAGTCCG GGGGGCTGGG
  GGGCGCGTCG AACACGGGCG ACTCGGACAG ACGGCGCGGC AGCTGGAAGC CGAAGGGCGG
  GGAGGGCGGC GCGGGGGCCG CGGGGGGCTG TGCCGGGGGT GGCGCGGGAC CGGTCAGGCC
  CTGCTGCTGG TTGCGGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss131326215	NCBIM37_NT_039649_chr17_84585179	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs107952286					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131326215	NCBIM37_NT_039649_chr17_84585179	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84493267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	within coordinates
Cpgi9566	CpG island 9566	1772 bp proximal
Rr340271	regulatory region 340271	within coordinates
Tssr146044	transcription start site region 146044	78 bp downstream
Tssr146045	transcription start site region 146045	1251 bp upstream
Tssr149650	transcription start site region 149650	252 bp upstream
Tssr149651	transcription start site region 149651	198 bp upstream
Tssr149652	transcription start site region 149652	148 bp downstream
Tssr149653	transcription start site region 149653	196 bp downstream
Tssr149654	transcription start site region 149654	336 bp downstream
Tssr149655	transcription start site region 149655	432 bp downstream
Tssr149656	transcription start site region 149656	522 bp downstream
Tssr149657	transcription start site region 149657	738 bp downstream
Tssr149658	transcription start site region 149658	795 bp downstream
Tssr149659	transcription start site region 149659	830 bp downstream
Tssr149660	transcription start site region 149660	861 bp downstream
Tssr149661	transcription start site region 149661	910 bp downstream
Tssr149662	transcription start site region 149662	969 bp downstream
Tssr149663	transcription start site region 149663	1033 bp downstream
Tssr149664	transcription start site region 149664	1074 bp downstream
Tssr149665	transcription start site region 149665	1119 bp downstream
Tssr149666	transcription start site region 149666	1188 bp downstream
Tssr149667	transcription start site region 149667	1277 bp downstream
Tssr149668	transcription start site region 149668	1332 bp downstream
Tssr149669	transcription start site region 149669	1365 bp downstream
Tssr149670	transcription start site region 149670	1898 bp downstream
Tssr149671	transcription start site region 149671	1988 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates