rs107952485 SNP Detail

Summary

• ID
  rs107952485
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:95970337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGACTAGAAT ATACAAATGA GAAAAGCCCA TTCACAAGGA
  TGTGTCATTG GGAGTAATAC TTTGAAGAGG ATCTGGGATT TCAATCTATC TGGCTGGCTG
  S
  CTCCCTCTCC TCTCTCTTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TTTCCTTCTC CCTCTCCCTC CCTCCCCCTC TCAGTATATT G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145641414	ENSMUSSNP3981047	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107952485					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95970337 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	Intron
Cpgi20868	CpG island 20868	1206 bp distal
Rr368590	regulatory region 368590	1618 bp upstream
Rr668196	regulatory region 668196	within coordinates
Rr668197	regulatory region 668197	1141 bp proximal