rs107953891 SNP Detail

Summary

• ID
  rs107953891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80038574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCCGGG AGTGCTCACT
  CCTAATGCAT GGCCTTTTAT TCACCCCTTA CTTATTCAGA CCCTCTAAAC TGGCTGCTGT
  CATCACCTCA CAGGCTTGTC CATGAGAGGA AACTGAGGCA TGGAGACATT CAGGCGTCTG
  GCCAGTCATA GGCTGGTGAT GGACCCAGAC GTCCTCAATC TAGAACATGT GTCCTTTACC
  R
  CTGTCTAGCT TGGGTGGGGA ACATCTCAGA AGTGTCTGTG TGGTGCCAGT CCAGCATTGT
  GTCACAGCCA GAGACTCCCT CAGCAGGTGC CAGGACTGGC TAAGTTAACA GTCCTTCCCT
  CCCAGTCTGA ACATCCAGTG CTTAAAAGCT TTGTCCCTAA TTTGCAGGGT TCAGTTTGCT
  TTATTGGGTA GGAGGTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148214183	ENSMUSSNP336029	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107953891					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80038574 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	974 bp distal
Rr310675	regulatory region 310675	1844 bp proximal
Rr314587	regulatory region 314587	174 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates