rs107953973 SNP Detail

Summary

• ID
  rs107953973
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90918699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT GCCTTAGAAA ATAAATGATC
  M
  GATTGCACAT TGGAAACCTT GCTCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148817277	ENSMUSSNP4078477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss321608298	CHEV_5_91199866	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107953973					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90918699 () rs orientation: forward

Symbol	Name	Function Class
Pf4	platelet factor 4	1663 bp upstream
Ppbp	pro-platelet basic protein	777 bp downstream
Rr125443	regulatory region 125443	1101 bp proximal
Tssr47183	transcription start site region 47183	1376 bp downstream
Tssr47184	transcription start site region 47184	1234 bp downstream
Tssr47185	transcription start site region 47185	1136 bp downstream
Tssr47186	transcription start site region 47186	981 bp downstream
Tssr47187	transcription start site region 47187	785 bp upstream
Tssr47188	transcription start site region 47188	1220 bp upstream
Tssr47189	transcription start site region 47189	1629 bp upstream
Tssr47190	transcription start site region 47190	1653 bp upstream
Tssr47191	transcription start site region 47191	1697 bp upstream
Tssr51801	transcription start site region 51801	778 bp upstream