rs107956288 SNP Detail

Summary

• ID
  rs107956288
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26062173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTCCCA AGTGCTGGGA
  GTAAAGGCGT GTGCCACCAC GCCCGGCTCA AATGAGTCTT AAAACAACAA CAACAACAAA
  ATGGCCAAGG AGATCCCCTC TTGCTTACCT TCTCAATGGT GGTCTCCTCA GACACATCGT
  ACACCACACA CACTACATTT GCCTAAAGGA AAGCAAGGCA CAGGGTAAGC ATAGTCTGCC
  K
  GCTCACTATG GACAGTACAG GCCACTCCTG GCCATGTCCC GGGTGCTCAC AGCAGGATGG
  GTAGGGCTCT GAGGCCAGGA AAGTCCACCT TTGCCAAGCA GGCCTCTCCC TGCCAACACT
  CCCTAAGAGA CACCAGACCC TAGCACCATG GCTCTAGACA GCACATCCTG GACTTATGAC
  AGACCTATCA CACGCAGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397885911	MGP_WTSI_17_25980144	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107956288					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397885911	MGP_WTSI_17_25980144	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26062173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8787	CpG island 8787	801 bp proximal
D17Jcs48	DNA segment, Chr 17, John C. Schimenti 48	389 bp proximal
Gm20683	predicted gene 20683	1436 bp upstream
Rhot2	ras homolog family member T2	within coordinates
Rr523682	regulatory region 523682	1642 bp proximal
Tssr146867	transcription start site region 146867	1220 bp downstream
Tssr146868	transcription start site region 146868	1245 bp downstream
Tssr146869	transcription start site region 146869	1289 bp downstream
Tssr146870	transcription start site region 146870	1315 bp downstream
Wdr90	WD repeat domain 90	1572 bp downstream