rs107958046 SNP Detail

Summary

• ID
  rs107958046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73143222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACAAAG AGTTCGGGAT
  TTGTTTAAGG CAATTCGTGT AAGCCAAGAG AAAGTGGCCT GATGGGATGG TAAAACGGGC
  ATTTCAACCT AGGTAGCCCT TTAACCTCAA TACCAGCGTT GACTAGAAAA CAGCCTCTTG
  TTTTCGCTTC TTCTAGGCTT CCTTGGCTAT CAGGAAGCTA TGGCCTCAGC CGCCAGCAGG
  Y
  GACGCCGATG ACGGGCAATG AGTCCCAGCT GCCGCAATTA CCAAGGCTGA GGCGTCTCCT
  TTAAGAAGCT GACTCACGTG GATGCTGTGT TGTGTGCGCT CAGCTGGGAG TGGGGGGCGG
  GTCCTCACTC TCACTACATT GGCCGCCTCG GCCGAGGAGG CAGACTTAGC CTCCTTGATT
  GGCCGTAAGG ATGCAAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398976821	MGP_WTSI_17_73185567	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107958046					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398976821	MGP_WTSI_17_73185567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73143222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	within coordinates
Rr335920	regulatory region 335920	1222 bp distal
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	28 bp upstream
Tssr5197	transcription start site region 5197	72 bp upstream
Tssr145775	transcription start site region 145775	429 bp upstream
Tssr145776	transcription start site region 145776	451 bp upstream
Tssr145777	transcription start site region 145777	497 bp upstream
Tssr145778	transcription start site region 145778	1326 bp upstream
Tssr145779	transcription start site region 145779	1397 bp upstream
Tssr145780	transcription start site region 145780	1817 bp upstream
Tssr149306	transcription start site region 149306	1242 bp downstream
Ypel5	yippee like 5	401 bp upstream