rs107959029 SNP Detail

Summary

• ID
  rs107959029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156713787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGAGACA GGGTTTCTCT GTGTAGCCCT GGCTGTCCTG
  GAACTCACTT TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCCGTATGCC TCTGCCTCCC
  R
  AGTGCTGGGA TCAAAGGCGT GCGCCACCAT GCCCGGCTGC TTTAAATGTT TTATTTCACG
  CTTGTGACTA AGAGTAGTTG TTCCTTCCTT AAATCTCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148084861	ENSMUSSNP2873695	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107959029					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156713787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			1008 bp distal
Rr568378	regulatory region 568378			1703 bp proximal
Rr568379	regulatory region 568379			1956 bp proximal
Tssr21217	transcription start site region 21217			631 bp upstream