rs107960987 SNP Detail

Summary

• ID
  rs107960987
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30386297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACAGGG TTTCTCTGTA
  TCGCCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG GCCTCGAACT CAGAAATCTG
  CCTGCCTCTG CCTCCTGAGT GTTGATTAAA GGTGTGCACC ACCACTGCCC AACTAATGGC
  TTTTACTTTG AATGTGGGTG TGTGTTCACT TAACAGAAAG TGTCCTGGTG GCTGCTGGTT
  K
  GTTTTTTTTT TTTTTTTTTG ATCCTAGAAA ACTGTTGAAC TCTTCTCCAC ACATAATGCT
  ATCACATCGT AGTTTCAATT ACATGTCTGA CATACAGGGT GGCTTTTAAA AGATGGATGG
  TTGGGGGAGA TGTATGCAGT GGCAGCTAAA TGATAAGTGT TAGCACTTGC TTCTAGCCTG
  GCACAAACTG GTAGTTCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145440460	ENSMUSSNP448907	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107960987					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30386297 () rs orientation: forward

Symbol	Name	Function Class
Gm50226	predicted gene, 50226	938 bp downstream
Rr341156	regulatory region 341156	1098 bp distal
Rr341157	regulatory region 341157	904 bp proximal
Zfand3	zinc finger, AN1-type domain 3	within coordinates