rs107961080 SNP Detail

Summary

• ID
  rs107961080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCCTGAGT GAAAGTACTG ATGTCACCGT
  TCCTTCTGGA AAGGGGCTAG AAATGGCAAC ACCAGGGGAA GTTAAGAGTG GCAGACGGGG
  TAACGGGGAC AGAAGGGAGA CCAGTTATCC CTCCCTACCC CTAAGTTATT CCTTGGGAAT
  W
  ACTTAGGTCA GTTAAATTCC AGAGCTATGG ACCTCTGGGC TTCAAGAACC CTGCACTTAA
  CCTTCATCCC AACACTGTAC CAGGAAacac tgaagataga tgtcctatgt tcaacccagg
  ctgtgctatt tattggcttg tgacagcggg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009169	PARCsnp_1.18663	PARC_SEQ	INBRED	f	SNP	A	T
ss320124218	CHEV_1_174255322	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs107961080					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	353 bp proximal
Gm36937	predicted gene, 36937	1530 bp downstream
Gm70847	predicted gene, 70847	1089 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	265 bp distal
Rr423526	regulatory region 423526	75 bp distal
Rr423527	regulatory region 423527	599 bp proximal
Rr423528	regulatory region 423528	706 bp proximal
Rr423529	regulatory region 423529	1121 bp proximal
Rr423530	regulatory region 423530	1648 bp proximal
Tssr15210	transcription start site region 15210	1027 bp downstream
Tssr15211	transcription start site region 15211	1037 bp downstream
Tssr15212	transcription start site region 15212	1057 bp downstream