rs107961303 SNP Detail

Summary

• ID
  rs107961303
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171016402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATATAAGC CTTAAAAAAG ACCCCACACC
  ACCACCATgc ctagcagtgg tggtgcatac ttttaatccc agcactcagg aagcagaggc
  aggcgggctt tttttgtttt tgtttttgtt tttgtttttg ttttttgttt tttgtttttg
  K
  ttttttgttt tttgtgagcc ctaggtcagc ctgatctact gagttccagg acatccaggg
  cttcacagag aagaccctgt ctccgaaacc caaaCCAACA CCCCCAAAAC AATCCCCCTT
  TGTCTTTATA TTGACATAAA TCCAAGGTTT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146156058	ENSMUSSNP2956053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320116988	CHEV_1_173118964	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs107961303					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171016402 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	828 bp upstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	197 bp distal
Rr423236	regulatory region 423236	338 bp proximal
Rr423237	regulatory region 423237	839 bp proximal
Rr423238	regulatory region 423238	1492 bp proximal