rs107961379 SNP Detail

Summary

• ID
  rs107961379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57016788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTTATG TGAAAATGGT
  CTCTCTCTAG CCCAGGCTGG CCTGGTCTGC TCTGAGCCTG TCATGTCCTA ATTTTGTCAT
  GTCCTAACAT TTGGTTACAT TCCCCTTAAA AGTTAAGGCC AGAAATTGGG AAGCTTAGGC
  AGGAGGACTG AAAAGAGTTT GAGGTCAGCT CAGGCTACTG AGACCCTCAC ATCAGGAAAG
  R
  AAAGTAAAAA AAAGAAAGGT TAAAGTCAAT GTCAACAGGA CCTGCTCAGC AGTTACTATG
  TGTGACCTCT TCCCTGTGGA CCCATAGCAG GTGGCAAGCC AGGGGCATGT TAGGACTTGC
  CCCATACATG TGCTAGGCCC AGGCTCGGTT CTCAGGTGAG ATGGAGCAGT CTCTATCTCA
  GTGTACCCTA CCTGCCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398562784	MGP_WTSI_17_56849211	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107961379					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398562784	MGP_WTSI_17_56849211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57016788 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3	RAN binding protein 3	within coordinates
Rr392775	regulatory region 392775	within coordinates
Tssr145328	transcription start site region 145328	920 bp downstream
Tssr145329	transcription start site region 145329	118 bp upstream
Tssr145330	transcription start site region 145330	148 bp upstream
Tssr145331	transcription start site region 145331	193 bp upstream
Tssr145332	transcription start site region 145332	216 bp upstream
Tssr145333	transcription start site region 145333	240 bp upstream
Tssr145334	transcription start site region 145334	276 bp upstream
Tssr145335	transcription start site region 145335	1154 bp upstream
Tssr148830	transcription start site region 148830	52 bp downstream