rs107961412 SNP Detail

Summary

• ID
  rs107961412
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72812530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAGGCAGAGG CAGGCGGATT TCTGAGTTCA AAGCCAACCT
  GGTCTACAGA GTGAGTTCCA GGACAGACAG GGCTACACAG AGAAACCCTG TCTCGAAAAA
  M
  CAAAAACCAA AAAAAAAAAA AAAAAAAAAA AAAGAATGAA CATCAGCAAG AGTATGACTC
  AGCATAAGGT GAGATTCAGT AGACTTCTCC AACCACAGTT G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146759550	ENSMUSSNP712014	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107961412					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72812530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	1090 bp distal
D130067C23Rik	RIKEN cDNA D130067C23 gene	586 bp downstream
Rr373352	regulatory region 373352	857 bp downstream
Sp3	trans-acting transcription factor 3	1740 bp upstream
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr24526	transcription start site region 24526	1715 bp upstream
Tssr24527	transcription start site region 24527	1274 bp upstream
Tssr24528	transcription start site region 24528	1246 bp upstream