rs107961452 SNP Detail

Summary

• ID
  rs107961452
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23733135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGAATGA GCATTTTGTT
  TTACCTTCTA AGAAGGACTG AAGCAGGCAA ACTTTGGTCA TCCTTCTTCT TGAGCTTCAT
  ATGTTCTGTG AATATTATAT TGGGTATTCG GTGGGTTAGG GATAATATCC ACTTATCAGT
  GAGCACATAC CATGTATGTA CTTTTGTTGC CTCACTCAGG ATGATATTTT CTAGTTCCAT
  C
  CATTTGCAAA AGAATTTCAT AAATTCATTG TTTTTAATAG TTGAATAGTA CTCCCTTGTG
  AAAATGTACC ATATTTTCTG TATCTCTGTT AAAGGACATC TAGGTTCTTT CCAGCTTCTG
  GGTATTATAA ATAAGGCTGC TATGAACATA GTGTAGCATG TGTACTTGTT ACATGTTGAA
  GCATCTTCTG GTTATATGCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J
ss397836669	MGP_WTSI_17_23651128	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J
rs107961452					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836669	MGP_WTSI_17_23651128	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23733135 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	1293 bp upstream
Rr329666	regulatory region 329666	1266 bp proximal