rs107967048 SNP Detail

Summary

• ID
  rs107967048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54792138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGTAAAT AAAAAATAAG CAAAAAATGT AATAAAAATT
  TTCAGAATAC TCACTCCTTT CTGCTCCTAA AGCGACCACC TTTTTAAAAA CAAAATAACC
  Y
  ACGGGTAAGA GAACTGCTGT ATCCTTTGTC CCTCTTCCAT TTCTCGGCTA TTACACACCT
  TCACATTTCT GAAGCACGGC ACCAACATTT ATTAGTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137771138	ENSMUSSNP119659	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107967048					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54792138 () rs orientation: forward

Symbol	Name	Function Class
Rr260899	regulatory region 260899	538 bp distal
Rr260900	regulatory region 260900	1063 bp proximal
Rr263772	regulatory region 263772	1114 bp distal
Snx6	sorting nexin 6	986 bp downstream