rs107969885 SNP Detail

Summary

• ID
  rs107969885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAATCA TGGCTGAGCA
  TTTGATATTG TAGGACACAG ATTATCTTTA ATATTTTCCC AAATTGATCT ATGTTTTGAT
  TTTTGTAATC ACTAGTTCTG ACACTTCCAC TTTTCATAAA TAAATAGTTC AAAATGGCAG
  AAGTACAGTG AGGGCCATTT TGGAAATTTC TGTAAATCCT GTTCTAGTCT CAGGCCAAAT
  W
  TTCTTCCTTT AATACCTTTT AATAATATAA CTGAAATCAG CAGCTCAGGC AACAACTTTA
  AAAGTCAAAA TTCTAACATA ATACTGACTA ACAATGTACT AACTTGATAC TCACATGCTG
  AAAACAGTAA AAAAAAAAAT ACTAAATTGC GTTTGAAAAT GAACAGGGAA CTTTGTACAC
  TACATGCAGA GAACACAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245695	ENSMUSSNP4511911	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107969885					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876582 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1181 bp downstream
Rr562815	regulatory region 562815	391 bp distal
Rr562816	regulatory region 562816	104 bp proximal
Tssr600	transcription start site region 600	1461 bp downstream
Tssr601	transcription start site region 601	1471 bp downstream
Tssr19429	transcription start site region 19429	1183 bp upstream
Tssr19430	transcription start site region 19430	1278 bp upstream
Tssr19431	transcription start site region 19431	1358 bp upstream
Tssr19432	transcription start site region 19432	1454 bp upstream
Tssr25660	transcription start site region 25660	1210 bp downstream
Tssr25661	transcription start site region 25661	1227 bp downstream
Tssr25662	transcription start site region 25662	1284 bp downstream
Tssr25663	transcription start site region 25663	1347 bp downstream
Tssr25664	transcription start site region 25664	1377 bp downstream
Tssr25665	transcription start site region 25665	1485 bp downstream