rs107973642 SNP Detail

Summary

• ID
  rs107973642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123268163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTCCTA AAGTGCAAAT
  CAGTAATGAA TATAAACATT TTTAAATAGT TGAAGTAAGA GTGGAAGCCA AGAGTGCTGG
  TACATGTGTA TAGTCCCAGC ATTCTAGAGG CAAGAACTGG AAAATCAAGA GATCAAGGCC
  AGCCTGGGCT ATACAAGACC CCATGTCAAA GAGAGGAGTG GGGGAGGGGG AGAGAGAAGA
  R
  GAGGAAGGAT GGAGAGGAAT AGAATTAAAA GTGAGTAGGT AACCAGGTGT GATAATGTCT
  TTACTCCCCT CACCCAGGAG ACAGAAGCAG GTGGATATCT GTGAGTTCAA GGTCCGTCTG
  CTTAAATATT GAGTTCCAAG CATCTGGGTG CTACACAGTG AGGCCCTGAC TTTAAAAGAA
  CAAAAGTGGC TAAGGTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137077264	ENSMUSSNP2808183	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107973642					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123268163 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	1438 bp proximal
Rr203065	regulatory region 203065	1729 bp proximal
Rr208064	regulatory region 208064	639 bp proximal