rs107978346 SNP Detail

Summary

• ID
  rs107978346
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35723177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCTTGCC TTCCAGGGCT
  CGTGATGATT TGTGGCGGGT GGCGTTCCTT CTCTCTTGTT TTTCTTGTGC TTTCCACAGT
  GTGGGGCCCA GCAGTAAGAA TCTGGGAATC TTGCCTCTGA GTTCTGTTTT CTTGGACCAG
  TCTGACAAGT GATGGAAGTG CTTAGGGACC AGACCCGGCT GAATGAATGA CTTCTATAAA
  M
  TGTCCAGATC CTGCATTGGT GAGAGGACCA GGAGGTGAAG CCAAACCACA CAGTCTACCA
  CTGTCTCCTG CACCCTCATC TCTGCCACTT ATCAGAGAAA ACATAGAGCA GACACTATCT
  CTTTGAAGGG GTTTGAGTCC TAGAAAATAT GAGCTAAATT TTAAGTACAA TTTTAATTTT
  AATGAAAGCT TCAGGGAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146415505	ENSMUSSNP205051	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs107978346					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35723177 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			1564 bp downstream
Rr555792	regulatory region 555792			1292 bp distal
Rr555793	regulatory region 555793			13 bp distal
Rr555794	regulatory region 555794			978 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant